Rice Genome Annotation Project

Introduction to the Rice Genome Annotation Project, Feb 6, 2013 – A paper describing the unified Os-Nipponbare-Reference-IRGSP-1,0 pseudomolecules and MSU Rice Genome Annotation Project Release 7 has been published in the journal Rice,, The MSU Rice Genome Annotation Project Database and Resource is a National Science Foundation project and provides sequence and …

The rice genome revolution: from an ancient grain to Green

Rice is a staple crop for half the world’s population, which is expected to grow by 3 billion over the next 30 years, It is also a key model for studying the genomics of agroecosystems, This dual role places rice at the centre of an enormous challenge facing agriculture: how to leverage genomics to … The rice genome revolution: from an ancient grain to Green Super Rice Nat Rev Genet, 2018

Sequencing the Rice Genome

The rice genome is 3,5 times the size of the Arabidopsis genome and the third largest public genome project undertaken to date, behind the human and mouse genomes, The International Rice Genome Sequencing Project IRGSP began in September 1997, at a workshop held in conjunction with the International Symposium on Plant Molecular Biology in Singapore, Scientists from many …

RPAN: Rice Pan-genome Browser

The rice pan-genome, the genome of rice species rather than an individual, has been constructed from 3K rice genomes with a medium sequencing coverage about 15X, This pan-genome contains ~370Mbp IRGSP genome and ~260Mbp novel sequences, which are almost the same size as an individual rice genome, This database provides: Basic information of 3,010 rice accessions; Sequences and gene …

The map-based sequence of the rice genome

The map-based sequence of the rice genome Abstract, Rice, one of the world’s most important food plants, has important syntenic relationships with the other Main, Rice Oryza sativa L, is the most important food crop in the world and feeds over half of …

A Draft Sequence of the Rice Genome Oryza sativa L, ssp

The genome of the japonica subspecies of rice, an important cereal and model monocot, was sequenced and assembled by whole-genome shotgun sequencing, The assembled sequence covers 93% of the 420-megabase genome, Gene predictions on the assembled sequence suggest that the genome contains 32,000 to 50,000 genes, Homologs of 98% of the known maize, wheat, and barley proteins …

The 3,000 rice genomes project

Purpose of Data Acquisition

Pan-genome analysis of 33 genetically diverse rice

Coupling with two existing assemblies, we developed pan-genome-scale genomic reso … Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations Cell, 2021 Jun 24;18413:3542-3558,e16, doi: 10,1016/j,cell,2021,04,046, Epub 2021 May 28, Authors Peng Qin 1 , Hongwei Lu 2 , Huilong Du 3 , Hao Wang 4 , Weilan Chen 4 , Zhuo Chen 2 , Qiang He 5 , Shujun Ou …

Rice_IR8_v1,7

1, Rice_IR8_v1,7 Organism: Oryza sativa Indica Group long-grained rice Submitter: The University of Arizona Date: 2016/12/06 Assembly type: Assembly level: Chromosome Genome representation: full GenBank assembly accession: GCA_001889745,1 latest RefSeq assembly accession: n/a IDs: 905321[UID] 3768198 [GenBank]

Rice Information GateWay RIGW

Rice is a major food for the world’s population and serves as a model plant in cereal genome research, The Rice Information GateWay RIGW was upgraded to Version 3,0 with the release of GAP-FREE reference genome assemblies, ZS97RS3 and MH63RS3,Designed as a basic platform for xian/indica rice study, RIGW presents the sequenced genomes and related information in systematic and …

Latin American rice breeding gets a boost from genomic tools

Scientists sequence the genome of basmati rice, Feb 05, 2020, Grain traits traced to ‘dark matter’ of rice genome, Dec 18, 2019, Recommended for you, Cats found to …

Rice Genome Annotation Project

Rice Genome Annotation Project Overview, We have been funded by the National Science Foundation to annotate the rice genome, A summary of the project and its goals are listed below, Rice is a model species for the monocotyledonous plants and the cereals which are the greatest source of food for the world’s population, While rice genome sequence is available through multiple sequencing projects

Analyzing 3024 rice genomes characterized by DeepVariant

The distribution of genome variant positions, across 3024 rice varieties, The distribution of allele frequencies across the rice genome, For a step-by-step tutorial on how to work with variant data in BigQuery using the Rice 3K data or another variant dataset of your choosing, consider trying out the Analyzing variants with BigQuery codelab,

OryGenesDB a database for rice reverse genetics

Genome Browser Gbrowse, a Web-based application for displaying genomic annotations and other features, is the core of our database, The reference annotation layer consists in the 12 rice pseudomolecules Version 7,0, 0ctober 2011, All the data are superposed as annotations layers and positioned with respect to these pseudomolecules,